I think I know what your talking about. I had something like that happen to me, I kinda wondered why whole sections were disappearing until I worked out it was when I highlighted a chunk to use a preset effect.
Now, this happened to me before I set up a profile so it was a stand alone sequence and I had re-ordered the channels. There's a thread about it somewhere - but if I recall someone said to open the VIX file in notepad (or just a plain text editor) and go to the channel output and put them back in numerical order. I'll try and find the thread . . . . .
I must admit that didn't work everything was still all screwy, so I had to abandon it, but it might work for you. After that I set up a profile and have reordered channels and haven't had a problem since.
Additional:
http://www.doityourselfchristmas.com...ead.php?t=4193 There you go. Hope this helps.
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